Persistent homology based segmentation

Related papers

• Haruhisa Oda. Topology enhances classical figure detection. 2025 5th International Conference on Electrical, Computer and Energy Technologies (ICECET), Paris, France, 2025. doi: 10.1109/ICECET63943.2025.11472121.
• Haruhisa Oda, Yusuke Imoto. Persistent homology-based segmentation tool for membrane images. Cell Reports Methods (2026) doi:10.1016/j.crmeth.2026.101366
• Haruhisa Oda. Persistent homological 3D cell detection. JSIAM Letters 16 (2024) 25-28. https://doi.org/10.14495/jsiaml.16.25
• Haruhisa Oda, Kazuo Tonami, Yoichi Nakata, Naoko Takubo, and Hiroki Kurihara. Persistent homological cell tracking technology. Scientific Reports 13 (2023) 10882. https://doi.org/10.1038/s41598-023-37760-3 (Direct link to text: https://rdcu.be/df6rI)
• Haruhisa Oda. Counting and detecting figures using persistent homology. JSIAM Letters 15 (2023) 33-36. https://doi.org/10.14495/jsiaml.15.33

Related codes

• 2D nuclei segmentation
• 2D cell segmentation and tracking
• 3D nuclei segmentation
• 3D membrane segmentation